// Written by Zhen Qi
// Set up geometry and membrane parameters and mechanisms

proc parameters() {
    forall {
        Ra = 100
        insert pas
        g_pas = 3e-5
        e_pas = -65
        insert extracellular
        insert xtra
    }
    
    forsec "soma" {
        cm = 1
        insert CaDynamics_E2_soma
        insert Ca_HVA_soma
        insert Ca_LVAst_soma
        insert Ih
        insert NaTs2_t_soma
        insert SK_E2_soma
        insert SKv3_1_soma
    }
    
    forsec "axon" {
        cm = 1
        insert CaDynamics_E2
        insert Ca_HVA
        insert Ca_LVAst
        insert K_Pst
        insert K_Tst
        insert NaTa_t
        insert Nap_Et2
        insert SK_E2
        insert SKv3_1
    }
    
    forsec "dend" {
        cm = 2
        insert Ih
    }
    
    forsec "apic" {
        cm = 2
        insert Ih
        insert Im
        insert NaTs2_t_apic
        insert SKv3_1_apic
    }
    
    // these are reasonable values for most models
    freq = 100      // Hz, frequency at which AC length constant will be computed
    d_lambda = 0.01
    
    forall {
        nseg = int((L/(d_lambda*lambda_f(freq))+0.999)/2)*2 + 1
    }
}
begintemplate Location2
	public secRef, loc
	objref secRef
	proc init() {
		secRef = new SectionRef()
		loc = $1
	}
endtemplate Location2

setstim(DEL, DUR, SCA)
detectFire("run.out")
quit()